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Aritificial Life: Cell on a Chip

In Technology Review: Cell on a Chip, Lauren Gravitz reports that researchers at Rensselaer Polytechnic Institute in Troy, NY, have created the first artificial cellular organelle. This “cell on a chip” will help researchers understand how our bodies produce the widely-used blood thinner heparin.

This is a critical step. After its discovery nearly a century ago, heparin remains almost impossible to create in a laboratory, and so is still made from pig intestines – a procedure susceptible to sometimes lethal contamination.

Fake cell: This microfluidics chip can replicate the activity of one of the eukaryotic cell’s most important, yet least understood, organelles–the Golgi apparatus. Researchers hope that it can help them understand how to create synthetic versions of important drugs such as heparin.
Credit: Courtesy JACS

The central mystery is the process by which a cellular organelle called the Golgi apparatus, converts proteins to sugar-studded glycoproteins. To emulate the Golgi’s workings, researchers created their very own artificial cell organelle – a small microfluidics chip – that acts as a precise, controllable, (eventually) automated Golgi analogue.

Funding and serendipity aligned, bioengineered heparin may enter clinical trials within five years.

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Aritificial Life: Cell on a Chip

Posted in Artificial Life, Biotechnology, Computational Biology, Medical, Microfluidics, Nanotechnology, Pharmacology, Synthetic Biology, Technology.

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Transparent aluminum? Scottie lives!

Experimental set-up at the FLASH laser used to discover the new state of matter

Experimental set-up at the FLASH laser used to discover the new state of matter.

University of Oxford scientists have created a transparent form of aluminum (across the pond, it’s “alumimium”) by bombarding the metal with the world’s most powerful soft X-ray laser. ‘Transparent aluminum’ is an exotic new state of matter that previously existed only in science fiction – specifically, in the original TV series, and again in Star Trek IV.

Aa short pulse from the  FLASH laser -  a new source of radiation ten billion times brighter than any existing synchrotron – “knocked out” a core electron from every aluminum atom in a sample, leaving the metal’s crystalline structure intact but turning the aluminum nearly invisible to extreme ultraviolet radiation. Potential applications include planetary science, astrophysics and nuclear fusion power.

A report of the research, “Turning solid aluminium transparent by intense soft X-ray photoionization,” appears in Nature Physics. (Note: abstract only if you don’t have a subscription or don’t purchase access.) The research was carried out by an international team led by Oxford University scientists Professor Justin Wark, Dr Bob Nagler, Dr Gianluca Gregori, William Murphy, Sam Vinko and Thomas Whitcher.

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Transparent aluminum? Scottie lives!

Posted in Futurism, Materials, Metamaterials, Nanotechnology, Physics, Science, Technology, Transhumanism.

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The Singularity Summit 2009: Coming to NYC in October!

First used in its current sense  by mathematician and scifi writer Vernor Vinge in 1993, and introduced to popular culture by technology futurist Ray Kurzweil 1n 2005, the Singularity is the theoretical future point of hyper-accelerating societal, scientific and economic change made possible by the emergence of machine superintelligence.

The premier dialog on the Singularity, the first Singularity Summit was held at Stanford in 2006 to further understanding and discussion about the Singularity concept and the future of human technological progress. It was founded as a venue for leading thinkers to explore the subject, whether scientist, enthusiast, or skeptic.

Since 2006, the scope of this dialog has expanded dramatically. In 2008, the Singularity entered mainstream consideration. IEEE Spectrum,  a sober and mainstream technology publication (and my old alumnus as the Japan Correspondent some time back), issued a special report on the Singularity, and Intel CTO Justin Rattner remarked that “we’re making steady progress toward the Singularity” during his keynote to 2,000 people at the Intel Developer Forum. What was once a relatively unknown concept is now being discussed in corporate boardrooms.

I’m definitely going (obviously, to those who know me), and heartily recommend that you join this extraordinary group of visionaries in business, science, technology, design, and the arts, as our diverse and growing community explores this exciting topic. Your participation offers a world of powerful ideas, a unique networking opportunity, and access to an exclusive directory of your peers.

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The Singularity Summit 2009: Coming to NYC in October!

Posted in Economics, Futurism, Nanotechnology, Neuroscience, Science, Singularity, Society, Synthetic Biology, Technology, Transhumanism.

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DARPA militarzing the paranormal (no, really)

Does Bond need Q when there’s real-world computer-mediated telepathy? With its Silent Talk program, DARPA (the Pentagon’s Defense Advanced Research Projects Agency) proudly says nope.

Start by scanning and mapping the brain’s electric signals via EEG. Analyze said signals and convert ‘em into words. Beam these to the soldier of your choice. Voila! Instant telepathy for only $4 million in R&D.

The ghost in the machine is subvocalization - word-specific neural signals that fly around the brain before the word itself is actually spoken. If these are (or can be made to be) the same for more than just the person whose brain was scanned, we’re in business.

But wait – there’s more!

DARPA is also applying the idea to – wait for it – mind-reading binoculars that would communicate a soldier’s thoughts about what s/he was seeing much faster than having to speak (which has now become SO 20th century).

Talk about (no pun intended) the end of privacy….

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DARPA militarzing the paranormal (no, really)

Posted in Communications, Military, Neuroscience, Science, Security, Technology.


Gray Goo? Bah! Watch out for Blue Goo!

Everyone’s soooo scared of gray goo – ya know, wantonly self-replicating, nanofabricating killer nanobots run amok and end all life on Earth through an orgiastic wave of ecophagy (literally, “eating the environment”). These pesky critters would be based on the molecular assemblers and nanfabricators envisioned by nanotech pioneer Eric Drexler, which “would join molecular building blocks to make products with atomic precision and unprecedented capabilities.”

While the possibility of this happening is remote and preventable (as described by Drexler and Chris Phoenix), the fact that it is even possible was enough to generate a new batch of fervent end-of-the-worlders. They’re so obsessed, in fact, that nobody’s discussing the next great wave of computer viruses that I poetically call blue goo.

Wazzat?

Allow me to explain: First, we need to take a quick trip to the emerging threat of hardware trojans – intentionally-place, impossible-to-detect defects that would drastically reduce the relibility and life expectancy of processors and memory chips. It’s serious enough that, among others, the Pentagon’s Defense Advanced Research Projects Agency (DARPA) is tracking the issue.

In my view, however, this is a weak hardware trojan (as in weak encryption or weak AI). So, you may well wonder, what would a strong hardware trojan be like?

Glad you asked. By exploiting the software that will control nanofabricators – which, by the way, use basic molecules as feedstock – such future micromonsters would commit technophagy by commandeering computer (or phone, or whatever) resources to create a small army of self-replicating nanonbots that devour the device from the inside out. Like parasitic wasps. (Warning: not for the queasy.)

No way!

Way.

Be afraid…be very afraid. And this time I mean it.

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Gray Goo? Bah! Watch out for Blue Goo!

Posted in Futurism, Science, Security, Technology.


Homo Syntheticus: synthetic DNA from synthetic oligonucleotides

Not just a sci-fi fantasy…

Summary:
Smith et al., 10.1073/pnas.2237126100

Press Release:
Institute for Biological Energy Alternatives

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Homo Syntheticus: synthetic DNA from synthetic oligonucleotides

Posted in Science.


Biologically Motivated Distributed Designs for Adaptive Knowledge Management

Great title! Especially interesting is the following section on the potential of a distributed XML Repository:

3.1.1 The XML Repository

We store pointers to published documents as XML records. By working with XML records, we gain the ability to change the information associated with their respective documents, which we cannot do with the proprietary databases. Indeed, the XML records should be seen more as dynamic objects rather than static documents. Not only do we gain the ability to change the original keywords and citation information from the respective documents, but also the ability to add annotations, links to other records, associations with other types of media (e.g. sound clips), etc. Furthermore, XML records can even have associated procedures to compute relevant algorithms. We can think of XML records as archival objects, “buckets” of pointers, links, data, and code, which are not affiliated with any one particular information resource, as defined by Nelson et al.

By transforming records from passive documents into active objects, we start our construction of the biologically motivated enabling substrate at the lowest level of information systems: the source data. This is an essential step to set up a distributed design. In centralized systems, documents can be passive since it will be up to a higher level program to decide if a certain document is relevant or not. In contrast, in distributed systems, much of the decision-making is off-loaded to lower-level components, which need to be endowed with computing capabilities. In this sense, records become active objects that store changing information, communicate with other components, and even perform actions (run code) on the information they store.

Here’s the paper:
Biologically Motivated Distributed Designs for Adaptive Knowledge Management

…and related material:
Active Recommendation Project

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Biologically Motivated Distributed Designs for Adaptive Knowledge Management

Posted in Web.


Homo Syntheticus: blueprints

The Federation of American Scientists’ Digital Human project is laying the groundwork for designing artificial organs of all types – check out this excerpt:

Artificial Organs and Prosthetics

Computer models are already being used to design artificial hips, hearing aids, prosthetics and other devices fitted precisely to the requirements of individual patients. The Digital Human will provide a reference model that would increase the accuracy and validity of these designs, as well as speeding the development of a much wider variety of devices. By combining a vast amount of measured information into a single model, the Digital Human simulations would provide a powerful tool for learning how to mimic the operation of human organs – whether the heart, or kidneys, or the ear. They would also help ensure an accurate interface between artificial organs and the environment in which they will function (including their performance under extreme conditions that would be otherwise difficult to test).

Read the project summary:
http://www.fas.org/dh/publications/consortium3.doc.

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Homo Syntheticus: blueprints

Posted in Science.


Homo Syntheticus, Addendum B: DNA/nanotube transistors

The paragraph that really struck me:

The scientists then coated the DNA with gold, producing a simple electronic device consisting of the nanotube connected to gold wires at each end. Current through the nanotube could be switched on or off by applying an electric field — the definition of a transistor.

Smaller Computer Chips Built Using DNA as Template

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Homo Syntheticus, Addendum B: DNA/nanotube transistors

Posted in Science.


Homo Syntheticus, Addendum A: artificial pores

You see where I’m going with this…genetic sequences that express as skin cells with toxic substance-detection capability. It starts here: ScienCentral: Super Screener

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Homo Syntheticus, Addendum A: artificial pores

Posted in Science.